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Rhodamine-12-dUTP

Rhodamine-12-dUTP is recommended for direct enzymatic labeling of DNA/cDNA by Nick Translation. It is incorporated as substi-tute for its natural counterpart dTTP. The resulting Dye-labeled DNA/cDNA probes are ideally suited for fluorescence hybridization applications such as FISH or microarray-based gene expression profiling. Optimal substrate properties and thus labeling efficiency is ensured by an optimized linker attached to the C5 position of uridine. Recommended Rhodamine-12-dUTP/dTTP ratio for Nick Trans-lation: 30-50% Rhodamine-12-dUTP/70-50% dTTP.

Product Specifications

Product Name Alternative

Rhodamine-X- (5-aminoallyl) -dUTP, Rho-green-X-dUTP, RhG-dUTP, R110-dUTP

Concentration

1.0 mM-1.1 mM

Purity

≥ 95% (HPLC)

Form

Solution in water; Color: orange; pH: 7.5 ± 0.5

Smiles

[nH]1c (=O) c (cn (c1=O) [C@@H]1O[C@H] (COP (=O) (O) OP (=O) (O) OP (=O) (O) O) [C@@H] (O) C1) /C=C/CNC (=O) CCCCCNC (=O) c1ccc (c (c1) c1c2ccc (cc2oc2-c1ccc (=[NH2+]) c2) N) C (=O) [O-]

Molecular Formula

C39H43N6O19P3

Molecular Weight

Theoretical MW: 992.71 g/mol (free acid) ; Detected MW: 992.18 g/mol (free acid)

Storage Conditions

Store at -20 °C. Short term exposure (up to 1 week cumulative) to ambient temperature possible

Notes

For research use only.

Applications Notes

Incorporation into DNA/cDNA by Nick Translation with DNAse I/DNA Polymerase Iin-house data. Spectroscopic Propertie: λexc 505 nm, λem 530 nm, ε 85.0 L mmol-1 cm-1 (Tris-HCl pH 7.5), CF 280 nm 0.27, CF 260 nm 0.39.

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