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5-Ethynyl-2'-deoxycytidine (5-EdC)

Ethynyl-labeled deoxycytidine (5-EdC) can be used as a replacement for BrdU (5-Bromo-2'-deoxyuridine) to measure de novo DNA syn-thesis during the S-phase of the cell cycle. 5-EdC is cell-permeabel and incorporates into replicating DNA instead of its natural analog thymidine. The resulting ethynyl-functionalized DNA can subsequently be detected via Cu (I) -catalyzed click chemistry that offers the choice to introduce a Biotin group (Azides of Biotin) for subsequent purification tasks or a fluorescent group (Azides of fluorescent dyes) for subse-quent microscopic imaging.

Product Specifications

CAS Number

69075-47-4

Product Name Alternative

5-Ethynyl-2'-deoxycytidine

Purity

99% (HPLC)

Form

Solid; Color: off-white

Solubility

DMSO

Smiles

N1 (cc (c (nc1=O) N) C#C) [C@H]1C[C@@H] ([C@H] (O1) CO) O

Molecular Formula

C11H13N3O4

Molecular Weight

Theoretical MW: 251.24 g/mol; Detected MW: 251.09 g/mol

References & Citations

Adler Guerrero Zuniga 1, Timothy J Aikin 1, Connor McKenney 1, Yovel Lendner 2, Alain Phung 2, Paul W Hook 3, Amy Meltzer 3, Winston Timp 3, Sergi Regot Sustained ERK signaling promotes G2 cell cycle exit and primes cells for whole-genome duplication Dev Cell, (2024)

Pubmed id

38640927

Storage Conditions

Store at -20 C

Notes

For research use only.

Applications Notes

DNA synthesis monitoring. Spectroscopic Propertie: max 291 nm, 8.5 L mmol-1 cm-1 (Tris-HCl, pH 7.5) .

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