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Aminoallyl-dUTP-XX-Cy3

Aminoallyl-dUTP-XX-Cy3 is recommended for direct enzymatic labeling of DNA/cDNA e.g. by PCR and Nick Translation. It is incor-porated as substitute for its natural counterpart dTTP. The resulting Dye-labeled DNA/cDNA probes are ideally suited for fluorescence hybridization applications such as FISH or microarray-based gene expression profiling. Optimal substrate properties and thus labeling efficiency is ensured by an optimized linker attached to the C5 position of uridine. Higher incorporation and thus labeling rates can be achieved compared to Aminoally-dUTP-Cy3. Recommended Aminoallyl-dUTP-XX-Cy3/dTTP ratio for PCR and Nick Translation: 30-50% Aminoallyl-dUTP-XX-Cy3/50% dTTP.

Product Specifications

Product Name Alternative

5- (3-Aminoallyl) -2'-deoxyuridine-5'-triphosphate, labeled with Cy3, Triethylammonium salt

Concentration

1.0 mM-1.1 mM

Purity

≥ 95% (HPLC)

Form

Filtered solution (30 kDa) in 10 mM Tris-HCl; Color: pink; pH: 7.5 ± 0.5

Smiles

C (/C=C/c1cn (c (=O) [nH]c1=O) [C@H]1C[C@@H] ([C@H] (O1) COP (=O) (O) OP (=O) (O) OP (=O) (O) O) O) NC (=O) CCCCCNC (=O) CCCCCNC (=O) CCCCCN1c2ccc (S (=O) (=O) O) cc2C (C) (C) /C/1=C\C=C\C1=[N+] (c2ccc (cc2C1 (C) C) S (=O) (=O) [O-]) CC

Molecular Formula

C55H78N7O23P3S2

Molecular Weight

Theoretical MW: 1362.29 g/mol (free acid) ; Detected MW: 1361.38 g/mol (free acid)

Storage Conditions

Store at -20 °C

Notes

For research use only.

Applications Notes

Incorporation into DNA/cDNA by: PCR with Taqpolymerasein-house data; Nick Translation with DNAse I/DNA Polymerase Iin-house data. Spectroscopic Propertie: λexc 550 nm, λem 570 nm, ε 150.0 L mmol-1, cm-1 (Tris-HCl pH 7.5), CF 2600.08.

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