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5-Propargylamino-dCTP-Texas Red

5-Propargylamino-dCTP-Texas Red is recommended for direct enzymatic labeling of DNA/cDNA e.g. by PCR and Nick Translation. It is incorporated as substitute for its natural counterpart dCTP. The resulting Dye-labeled DNA/cDNA probes are ideally suited for fluo-rescence hybridization applications such as FISH or microarray-based gene expression profiling. Optimal substrate properties and thus labeling efficiency is ensured by an optimized linker attached to the C5 position of cytidine. Recommended Propargylamino-dCTP-TexasRed/dCTP ratio for PCR and Nick Translation: 20-30% Propargylamino-dCTP-TexasRed7/80-70% dCTP (PCR), 30-50% Propargylamino-dCTP-TexasRed/70-50% dCTP (Nick Translation) .

Product Specifications

Product Name Alternative

5-Propargylamino-2'-deoxycytidine-5'-triphosphate, labeled with Texas Red, Triethylammonium salt

Concentration

1.0 mM-1.1 mM

Purity

≥ 95% (HPLC)

Form

Solution in water; Color: red-violet; pH: 7.5 ± 0.5

Smiles

[C@@H]1 (C[C@@H] (O[C@@H]1COP (=O) (OP (=O) (OP (=O) (O) O) O) O) n1c (=O) nc (c (c1) C#CCNC (=O) CCCCCNS (=O) (=O) c1cc (c (cc1) C1=c2c (Oc3c1cc1c4c3CCCN4CCC1) c1c3=[N+] (CCCc3c2) CCC1) S (=O) (=O) [O-]) N) O.[C@@H]1 (C[C@@H] (O[C@@H]1COP (=O) (OP (=O) (OP (=O) (O) O) O) O) n1c (=O) nc (c (c1) C#CCNC (=O) CCCCCNS (=O) (=O) c1cc (ccc1C1=c2c (Oc3c1cc1c4c3CCCN4CCC1) c1c3=[N+] (CCCc3c2) CCC1) S (=O) (=O) [O-]) N) O

Molecular Formula

C49H58N7O20P3S2

Molecular Weight

Theoretical MW: 1222.07 g/mol (free acid) ; Detected MW: 1221.24 g/mol (free acid)

Storage Conditions

Store at -20 °C

Notes

For research use only.

Applications Notes

Incorporation into DNA/cDNA by: PCR with Taqpolymerasein-house data; Nick Translation with DNAse I/DNA Polymerase Iin-house data. Spectroscopic Propertie: λexc 588 nm, λem 609 nm, ε 80.0 L mmol-1 cm-1 (Tris-HCl pH 7.5) .

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